VariantAnnotation
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Bioconductor
Annotation of Genetic Variants
I'd like to propose a couple of potential optimisations, particularly useful for cases where many entries are the same (e.g. AD: NA NA for GT: "./."). I'm working with a...
It is defined as > A GRanges describing the sequences and ranges to be queried. But, in the constructor of `ScanVcfParam` > The ‘which’ argument to the constructor can be...
For the `...` parameter of `readVCF`, the description is "Additional arguments, passed to methods. For import, the arguments are passed to readVcf". But there are four other functions documented in...
A minimal example using one file, although I noticed the problem when using two distinct files. ```r vcf
First off, thanks for an excellent tool. This is a bit of a niche issue, but I was wondering is it possible to pass readVCF a character string instead of...
Would be useful to filter a VCF incrementally by range. Range-based iteration makes sense when e.g. removing duplicates. Right now `filterVcf()` only works by yield count. The GenomicFiles package makes...
Hi, when I use the `readVcf` command, I encounter an error that my input file is not recognized as a VCF. The specific command I am using and error is...
