BiocParallel
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Bioconductor
Bioconductor facilities for parallel evaluation
in late January. it seems the CRAN package logger can be substituted with some simple changes to function names.
Hello, I have a very strange bug that appear on Rstudio alone. When I run code on Biocparallele with R command (in a terminal). The function work perfectly, no probleme....
There is an inconsistency in how `DoparParam()` relays captured standard output. It appears to depend on which `%dopar%` adapter is registered. For example, ```r > foreach::registerDoSEQ() > out doParallel::registerDoParallel(2) >...
Is it possible to disable capturing of stdout? Specifically, is there an option/argument I can pass such that the following output does not appear: ```r > library(BiocParallel) > y
Hello, I have a question about the memory of the parallel. I am on linux so the parameter for the parallelism is MulticoreParam. Each time a session spawn, the whole...
output of `?bpexportvariables` includes ``` ‘bpexportvariables(x)’, ‘bpexportvariables(x) library(BiocParallel) > SnowParam()$exportvariables [1] TRUE > MulticoreParam()$exportvariables [1] FALSE > SerialParam()$exportvariables [1] FALSE > sessionInfo() R Under development (unstable) (2025-04-08 r88126) Platform: x86_64-pc-linux-gnu...
Installing with BiocManager::install() fails (on windows and some mac machine). Quick fix: Installing with remotes::install_github()
``` :notice:build ---> Building R-BiocParallel :debug:build Executing proc-pre-org.macports.build-build-0 :info:build xinstall: mkdir /opt/local/var/macports/build/_opt_local_ppcports_R_R-BiocParallel/R-BiocParallel/work/build :debug:build Executing org.macports.build (R-BiocParallel) :debug:build Environment: :debug:build CC_PRINT_OPTIONS='YES' :debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_ppcports_R_R-BiocParallel/R-BiocParallel/work/.CC_PRINT_OPTIONS' :debug:build CPATH='/opt/local/include' :debug:build DEVELOPER_DIR='/Developer' :debug:build DYLD_LIBRARY_PATH='/opt/local/lib/libgcc' :debug:build LIBRARY_PATH='/opt/local/lib'...
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Bioconductor facilities for parallel evaluation