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Update GitHub actions

3

Hi @sahar-frikha After processing the first PR coming from the GitHub actions, if have noticed the following - [x] The hierarchy is empty (we have talked about it already) -...

ljgarcia

Incorporation of other standards?

1

I am involved in MIxS which has developed many packages over the years for different sample types and beyond. For example for soil: https://genomicsstandardsconsortium.github.io/mixs/soil/index.html (the GitHub website is still buggy)....

jjkoehorst

Replace exampleURLs with resource name in Live Deploys/By Profile

4

Live Deploys/By Profile list all profiles of live deploys but it misses the resource name and uses exampleURL instead which might be missing (see for example [MolecularEntity](https://bioschemas.org/developer/liveDeploys#nav-profile) profile). This is...

ivanmicetic

getting to the formal specification

3

Draft spec suggests dct:conformsTo to point to a versioned bioschema profile, which i assume is an HTML document. Is there a clear mechanism to point to a formal specification of...

micheldumontier

Some remarks on the GitHub Actions workflow

3

Hello, I had some comments when going through the workflow file. I think it can be shortened a lot. - I see that @sahar-frikha you are using a personal GitHub...

bedroesb

The [ELIXIR Machine Learning Focus Group](https://elixir-europe.org/focus-groups/machine-learning) (including the task force on synthetic data) and [NFDI4DataScience](https://www.nfdi4datascience.de/) (and possible [RDA FAIR4ML IG](https://www.rd-alliance.org/groups/fair-machine-learning-fair4ml-ig)) are interested in using metadata to describe the distribution of...

ljgarcia

BioSample referenced as type only in JSON-LD

2

Hello, I would like to report an issue concerning both the BioSample Profile and Type: BioSample definition in the JSON-LD of [DDE](https://github.com/BioSchemas/bioschemas-dde/blob/main/bioschemastypes.json) and [Specifications](https://github.com/BioSchemas/specifications/tree/master/BioSample) github repositories seems to be defined...

thomasrosnet

Not latest Bioschemas profile URL (DDE)

1

Hello, Some profiles in the DDE [JSONLD](https://github.com/BioSchemas/bioschemas-dde/blob/main/bioschemas.json) specs, have the [schema:schemaVersion] property not properly pointing to the corresponding Bioschemas profile webpage. As follows, Dataset, Course, ChemicalSubstance, MolecularEntity profiles references in...

thomasrosnet

Issue with ComputationalWorkflow inputs and outputs

2

While working on Bioschemas validation for workflows, we found that none of the input or output parameters were retrieved with RDF parsers. JSON-LD playground cannot get workflow inputs/outputs. [wf_18.jsonld.txt](https://github.com/BioSchemas/specifications/files/10558537/wf_18.jsonld.txt) There...

albangaignard

The [ELIXIR Machine Learning Focus Group](https://elixir-europe.org/focus-groups/machine-learning) (including the task force on synthetic data) and [NFDI4DataScience](https://www.nfdi4datascience.de/) (and possible [RDA FAIR4ML IG](https://www.rd-alliance.org/groups/fair-machine-learning-fair4ml-ig)) are interested in using metadata to describe the distribution of...

ljgarcia