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BioSchemas
Issue tracker, technical wiki, and example markup
## Internal reference https://github.com/BioSchemas/specifications/issues/657 and https://github.com/BioSchemas/specifications/issues/639 ## Description A the BioHackathon Europe 2022 this was discussed with @AlasdairGray and Evan Bolton. Since then, the properties have been made optional, but...
As explained in https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-021-00520-4.pdf: ``` The author-submitted template file should contain at least one of the following columns: SMILES, InChI, Name or InChIKey. ```
Original message by @ptsefton at https://github.com/BioSchemas/specifications/issues/653#issuecomment-1740468713 > BTW, also as an outsider though the properties `input `and `output` in particular ring alarm bells for me; these are semantically the same...
In the bioschemas [schema](https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemas.json) the @context has: ``` "bioschemas": "https://discovery.biothings.io/view/bioschemas/", ``` And Classes and properties are defined below. Eg: ``` { "@id": "bioschemas:ComputationalWorkflow", "@type": "rdfs:Class", "rdfs:comment": "A computational workflow ...",...
We already had a discussion (starting [here](https://github.com/BioSchemas/specifications/issues/321#issuecomment-526893861)) about adding `hasBioPolymerSequence` as a sub-property of `hasRepresentation` and moving `inChI`, `inChIKey`, and `smiles` properties to being sub-properties as well. The outcomes of...
Getting markup from data records (like `Gene`, `Protein`, `ChemicalSubstance`..., from dumps or individual pages) looses connection to the `Dataset` (and it's parent `DataCatalog`) profile unless `includedInDataset` property is present. However...
All minimum properties from the released version https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE (identifier, name, url) have been removed (name and url) or moved to optional (identifier), changes reflected in the draft version 0.6 https://bioschemas.org/profiles/MolecularEntity/0.6-DRAFT...
@stain @CaroleGoble Could you please look into the following issues with ComputationalWorkflow and FormalParameter profiles? * FormalParameter * [ ] additionalType should not be used. That property was added to...
I'd like some clarifications on the SemanticTextAnnotation profile, which appears to be a [new proposed profile here][10] to associate texts with semantic annotations. [10]: https://bioschemas.org/profiles/SemanticTextAnnotation/0.3-DRAFT * Does the specification imply...
Not sure how 'on topic' a profile for medical questionnaires, surveys or question based diagnostic 'clinical tools' would be... Give this a thumbs up if you think it's on topic...
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