BioOmics

Issues with Hexaploid Assembly

6

Hi, @chhylp123 We are currently attempting to assemble a hexaploid using hifiasm with the following command: ``` hifiasm -t 100 -l3 --n-hap 6 --dual-scaf --ul ${ont} --h1 ${hic1} --h2 ${hic2}...

Running OrthoFinder with Large Species Set (>2k)

9

Hello, I'm currently running `OrthoFinder` on a cluster with `2000` species. Besides using the `-op` option for `BLAST`, are there any other commands or methods for distributing the tasks? Additionally,...

The execution failed on the [T2T wheat genome](https://ngdc.cncb.ac.cn/gwh/Assembly/83928/show), and the `genome.fa.pass.list` file was not generated. What should I do? ```bash ############################ ### LTR_retriever v3.0.1 ### ############################ Contributors: Shujun Ou, Ning...