BioOmics

Thanks! Here, after done `orthofinder -b WorkingDirectory/ -S diamond -t 50 -a 50 -M msa`, can i run `orthofinder -fg ./Results_Jul27_1 -t 50` to change using the [STAG](https://github.com/davidemms/STAG) algorithm? (Because...

Thank you for your update. I am using [OrthoFinder v3.0.1b1](https://github.com/davidemms/OrthoFinder/releases/tag/3.0.1b1) and encountering some issues: ### Installation I failed to install it using the following command: ```bash conda create -n orthofinderv3...

Thanks!!!! I downloaded the latest version of ASTRAL-Pro (to be precise, ASTRAL-Pro3), and everything is now working perfectly. A small suggestion: on your [release](https://github.com/davidemms/OrthoFinder/releases) page, the link points to an...

Hi, Sorry to bother you again. I found that after replacing astral-pro3 with OrthoFinderv3, the program runs smoothly to completion, but the resulting species tree lacks genetic distances, and I’m...