deep-rules

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Future-proof: Plan how you will support and share your model

6

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [X] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...

smsaladi

Use a simple linear and non-linear model as a baseline for measuring progress.

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**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [x] Yes Use a simple, linear model, e.g., (multinomial) logistic regression or...

rasbt

Abstract as much as possible

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**Have you checked the [list of proposed tips](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Atip) to see if the tip has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...

Benjamin-Lee

Fun example that highlights over fitting (not DL specific)

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Fun example that highlights over fitting (not DL specific) https://twitter.com/harmonslide/status/1092178779382972417?s=19

chevrm

Make sure your problem is a good fit for deep learning.

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Not all problems are equally amenable to deep learning. Make sure that there is a high prior probability that your problem will benefit from deep learning. Some useful rules of...

beamandrew

From November 2018: https://journals.plos.org/plosmedicine/issue?id=10.1371/issue.pmed.v15.i11 More focused on medicine than biology, but has some interesting points. I read the editorial https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002721, which references some of the papers in the issue, including...

SiminaB

JAMA viewpoint on deep learning in medicine

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https://jamanetwork.com/journals/jamainternalmedicine/fullarticle/2718342 (very short) We're focusing in biology, not medicine, but some of this is relevant: Data quantity: > Applying deep learning techniques to more complex and heterogenous disease states, such...

SiminaB

Understand, protect against, and benchmark possible overfitting

3

**Have you checked the [list of proposed rules](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Arule) to see if the rule has already been proposed?** - [X] Yes **Feel free to elaborate, rant, and/or ramble.** **Any citations for...

chevrm

Understand the trade-off between interpretability and performance

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Deep learning methods are notably difficult to interpret. If data is provided without explicitly engineered features, how are you going to address finding any biases in predictions? What sort of...

signalbash

A primer on deep learning in genomics

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https://doi.org/10.1038/s41588-018-0295-5 > Deep learning methods are a class of machine learning techniques capable of identifying highly complex patterns in large datasets. Here, we provide a perspective and primer on deep...

agitter