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Benjamin-Lee
Ten Quick Tips for Deep Learning in Biology
**Have you checked the [list of proposed tips](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Atip) to see if the tip has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...
**Have you checked the [list of proposed tips](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Atip) to see if the tip has already been proposed?** - [x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making a...
**Have you checked the [list of proposed tips](https://github.com/Benjamin-Lee/deep-rules/issues?q=is%3Aissue+is%3Aopen+label%3Atip) to see if the tip has already been proposed?** - [ x] Yes **Did you add yourself as a [contributor](https://github.com/Benjamin-Lee/deep-rules/blob/master/contributors.md) by making...
https://deepmind.com/blog/alphafold/ Currently, there is no formal paper introducing AlphaFold available. But as a paper in 2019, I think it is worth mentioning AlphaFold in the paper.
- [x ] Yes - [x ] Yes, I added myself or am already a contributor **Feel free to elaborate, rant, and/or ramble.** DL is increasingly used for bioimage analysis...
> Machine learning has demonstrated potential in analyzing large, complex biological data. In practice, however, biological information is required in addition to machine learning for successful application. https://doi.org/10.1186/s13059-019-1689-0
> Extracting inherent valuable knowledge from omics big data remains as a daunting problem in bioinformatics and computational biology. Deep learning, as an emerging branch from machine learning, has exhibited...
> As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially...
https://doi.org/10.1101/563601 This is a (yet another) review article that may be of interest because they provide eight examples of representative deep learning problems in biology: https://github.com/lykaust15/Deep_learning_examples It doesn't look like...
I'm surprised that we haven't cited [this paper](https://www.usenix.org/system/files/conference/usenixsecurity14/sec14-paper-fredrikson-privacy.pdf) in Tip 10 yet. ## Abstract We initiate the study of privacy in pharmacogenetics, wherein machine learning models are used to guide...
