Mfannot
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BFL-lab
MFannot is a program for the annotation of mitochondrial and plastid genomes
.gbk
Hi. I am working with mfannot to obtain my annotation of MT genome, but I have .tbl .sqn and .fsa and now I need .gbk or .gb I have used...
Please explain what does this mean? `Cannot read result for 'IntronI'; maybe there were problems with the commands?`
@natacha-beck would you mind bumping the [Ubuntu version in the Dockerfile](https://github.com/BFL-lab/Mfannot/blob/0990c858a5a90a86eb3efc372460686e67039aac/Dockerfile#L1) to v20.04 or greater? The current version does not support attaching [VSCode to the container](https://code.visualstudio.com/docs/remote/faq#_can-i-run-vs-code-server-on-older-linux-distributions).
I would like to describe not an issue in a strict sense, but a rather painful problem while using the web server (https://megasun.bch.umontreal.ca/apps/mfannot/). When I load a particular large mitochondrial...
MFannot throws an error when run with the `--sqn` option in the Docker container. Running mf2sqn also fails. When I try to run mf2sqn directly I get the error `Accepted...
Using the MFannot docker container. If the `--T` option is set then step 1 fails even though `Masterfile_copy` is created in the correct location. ```bash mfannot -g 4 -l data/test_mito.log...
Hi,@natacha-beck ! I am trying to run MFannot locally, from docker-container. Am I right, that the only input format is the Masterfile? How can I get a Masterfile from nucleotide...
Hello @natacha-beck I am using the Docker version with apptainer. I get the following error at step 13: ``` ... 12) Identify start codons; identify gene fusions... 13) Find extra...
Hello, I'd like to cite Mfannot as a tool in a paper but am unsure exactly what to reference besides this Github repo. Is there a particular paper you'd recommend...
I have been trying to install Mfannot in a linux-based server. When I run “mfannot –h” to test the program I keep getting the following error: ``` Can't locate PirObject.pm...
