Using temp option breaks MFannot

[Adamtaranto]

Using the MFannot docker container.

If the --T option is set then step 1 fails even though Masterfile_copy is created in the correct location.

mfannot -g 4 -l data/test_mito.log -o data/test_outfile --T data/tmp examples/allomyces.fna

Error:

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         Gene Annotation          
----------------------------------
Parsing masterfile examples/allomyces.fna...

1) Translate (flip)...
Cannot read from masterfile 'data/Masterfile_copy': No such file or directory