B1991ing

Hi Houyun, If we directly install the linked as the instruction below. Will we directly install the newest upcoming 1.0.0 version? # install.packages("devtools") devtools::install_github("Hy4m/linkET", force = TRUE) packageVersion("linkET") Best, Bing

> Hello @B1991ing , > > you can try the option `--use-ftp` to download it. Nevertheless, in the past days I had issues in downloading the bacteria libraries in this...

> Hello @B1991ing , > > No error, it is probably running. You can check if kraken runs with `htop `or `top`. Downloading the nt database is a time-consuming task,...

> The first one looks like a firewall/connectivity issue to the NCBI website, so you may need to use ftp for downloading files. Thank you very much for your reply....

> For the 2nd image, i dont think you need threads for downloading the file. Also, are you using the most recent code? Using threads for downloading the file is...

> Also, are you using the most recent code? We're using the code of July 2023. I will suggest our admin to use the code updated **four months before**.

same issue kraken2-build --db bacarcDB --build --threads 64

Update Solved. Without --use-ftp, it works. /work/home/songbing/miniforge3/envs/kraken2_Bracken/bin/kraken2-build --db /work/home/songbing/kraken2DB/ --download-taxonomy --threads 60 Best, Bing