B-Sevchik

cubids apply renaming variants bug

1

## Summary Running `cubids apply` is not re-naming variants explicitly for the fmap variants. Case where cubids failed: - **original name of entity set**: acquisition-dwi_datatype-fmap_direction-AP_fmap-epi_run-01_suffix-epi; acquisition-dwi_datatype-fmap_direction-PA_fmap-epi_run-01_suffix-epi; acquisition-fmri_datatype-fmap_direction-AP_fmap-epi_run-01_suffix-epi; acquisition-fmri_datatype-fmap_direction-PA_fmap-epi_run-01_suffix-epi - **suggested...

updating names of files in scans.tsv after running cubids apply

2

## Summary I would like cubids to have the ability to change the scans.tsv files for all of the subjects in which running cubids apply has changed the names of...

BIDS Validation & file integrity checks does not finish/lags on OpenNeuro website

3

### What went wrong? I am trying to create an initial version of multiple repos on OpenNeuro so that I can publish them, but am unable to do so either...