Axolotl233

Questions about inbreeding species and parameter

3

Hi community, I wonder if xpclr method can apply on inbreeding plant species, although i know it was originally designed to dectect the selection of human genome. Besides, i want...

Mistakenly purge of homozygous seqence in polyploid genome

3

Hello Dr. Cheng and community, I recently used hifiasm to assemble a allotetraploidy genome, and my command is `hifiasm -o out -t60 --primary --h1 hic_1.fq.gz --h2 hic_2.fq.gz ccs.fastq.gz`. HiFiasm was...

Hello commuity, I have troubles understanding my smudgeplot. I noticed that the master branch of smudgeplot updated in Sep 24 (Oriel version), and readme file declared that it will be...

small suggestion for input

1

Hi, developer. Thank you for developing such a good tool for genome assessment, here is a small change to improve compatibility when input files are provided by softlink and changed...

How can I recover sequences from collapsed homologous regions?

2

Hello, Thank you for devoloping such good tool for polyploid genome assembly. Now I am assembling a tetraploid plant genome (AABB) with two closely related subgenomes using HiFi and Hi-C...

How to obtain more complete unitigs

2

Hello, I am assembling a tetraploid plant genome (AABB) with two closely related subgenomes using HiFi and Hi-C data (without ONT). My goal is to obtain two complete haploid genomes...