Anton Petrov
Anton Petrov
Example: https://github.com/nawrockie/ribovore/blob/master/models/ribo.0p20.modelinfo ribotyper can give you an error if scores for two models in different domains are really close, this indicates that ribotyper and its models can't confidently assign the...
It is important to clarify what the license for this software is. At EBI we commonly use [Apache 2.0](https://www.apache.org/licenses/LICENSE-2.0) but BGSU may have specific requirements.
Use `--1blast` ribotyper option to search for templates using NCBI blast instead of Infernal. This method is used for all models except for Rfam.
There are several things to consider: - Bundle Rfam and CRW models into 2 files (`all.cm`) and use cmfetch when individual models are needed - Commit all.cm to git or...
- [ ] Make sure all tests pass - [ ] Generate precomputed library - [ ] Update version info in Readme and shared.py - [ ] Deploy the latest...
- Consider dockerless distributions with all dependencies bundled in. PyInstaller, cx_Freeze, Py2exe, PyInstaller and Py2app would be good options - Consider bundling everything in a conda environment and distributing it...
@fryzjergda Hi Tomasz! 👋 Here is an outline of the mini-project that we discussed: - Please base your work on the `develop` R2DT branch as it contains the latest code...
Example: [NiCo riboswitch](https://riboswitch.ribocentre.org/images/2D/NiCo_riboswitch_2D2.svg). These are SVG files so it should be possible to parse them into traveler XML format and create a fasta file with an extra line for secondary...