Anna Schaar
Anna Schaar
do you need python 3.10 for a specific other dependency you want to use? I recently installed it on 3.9 and worked with ncem evrsion 0.1.5.
there is another issue upcoming, namely that patsy is no longer maintained and the whole linear ncem model backend is dependent on patsy. had not yet have time to think...
but nevertheless this 3.10 issue is def a bug, will look into it. Thanks!
would it then make generally sense to add an optional hue parameter in seaborn based plotting functions? was checking if hue is anywhere used but does not seem to be...
Hi @arunchakra, we are currently in the process of enhancing our documentation to follow more closely scverse packages so it's easier to use the package. I just released a new...
Hi @ankitbioinfo, yes you can run the analysis on your own data by just switching the tutorial code to ``` ncem.data = customLoader( adata=ad, cluster='clusters', patient=None, library_id=None, radius=52 ) ```...
I would define this as an additional column in obs of celldata, and I'll check how we ensure this is then subsequently used. Yes would also go for the set...
Yes also just edited!
Looks good to me.
Thanks for raising the questions. I assume your data is stored in a csv file? Ncem for custom data depends on AnnData as an input data object. More information on...