AnaAzambuja

Hi Caleb, thank you for your answer. HEre it is. Ana (py27) aa733@ag-mbg-6003742:/data/Ana/ESInduction/D5_r1/hichipper_output_D5_r1$ ls -lRh .: total 88G -rw-rw-r-- 1 aa733 aa733 19G Aug 21 17:28 allpairs.bed.tmp -rw-rw-r-- 1 aa733...

NF_H3K27Ac.filt.intra.loop_counts.bedpe hichipper_NF_output.hichipper.log hichipper_NF_output.hichipper.qcreport.html NF_H3K27Ac.stat NF_H3K27Ac.interaction.txt.gz.tbi NF_H3K27Ac.anchors.bed NF_H3K27Ac.interaction.txt.gz NF_H3K27Ac.intra.loop_counts.bedpe NF_H3K27Ac.inter.loop_counts.bedpe hichipper_NF_output.hichipper.qcreport_files Thanks

Hi Caleb, sorry bothering you, but you have any idea why this is happening? I got the mango file before with different datasets... Thanks, Ana

total 1.3G -rw-rw-r-- 1 aa733 aa733 271M Jun 13 18:22 NF_H3K27Ac.inter.loop_counts.bedpe -rw-rw-r-- 1 aa733 aa733 582M Jun 13 18:23 NF_H3K27Ac.intra.loop_counts.bedpe -rw-rw-r-- 1 aa733 aa733 345M Jun 13 18:23 NF_H3K27Ac.filt.intra.loop_counts.bedpe -rw-rw-r--...

HI, just saw that initially I sent you the wrong log file. Here is the correct one, using the "peaks specification" as "COMBINED,ALL'( I also tried EACH, with the same...