AmpliconSuite-pipeline
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AmpliconSuite
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Hi Jens, How to interpret results like "Segments=0+,12+,0-"? There is only one segment in this cycle. Best, Keren
Hi Jens, After running AmpliconArchitect, I got results like following: Cycle=66;Copy_count=0.0929550935359;Segments=13+,83-,105+,139-,0-,0+. I don't know how to interpret this result. Could you please do me a favor? Best, Keren
1. Sometimes after running AA and getting ecDNAs, we also want to find some somatic mutations or allele-based CNA and so on, so the RG tag in bam is mostly...
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A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.