Alina Orozco

Pacbio errors creating se object

12

Hi! I have downloaded my genome assembly from here : http://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz and I have tried these gtf files: * https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/gencode.v39.annotation.gtf.gz * https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/gencode.v39.chr_patch_hapl_scaff.annotation.gtf * http://ftp.ensembl.org/pub/release-105/gtf/homo_sapiens/Homo_sapiens.GRCh38.105.chr_patch_hapl_scaff.gtf to use with the mapped output...