Alina Orozco

Hi! Thanks for your response. I am not able to find the function checkInputSequence() in this package and I checked a few other libraries as well. Do you have a...

No worries. I went back to double check the genome file I used originally for mapping with IsoSeq3 and it was from Ensembl [https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/GRCh38.primary_assembly.genome.fa.gz] so I use their gtf [gencode.v39.annotation.gtf]...

1. Unfortunately as these are patient samples and I am in the EU I think I am not able to share the bam themselves. 2. I reinstalled bambu from Github,...

1. The individual .bam has 4600 reads using ( samtools view -c test.bam3) 2. The combined bam file has 47096 using same command 3. I added it to my new...

Hi again! I tried your suggestion and sadly still not working. Using the below commands: ´´´ se1a