Alexandre Thibodeau

problem with downloading databases

11

Hello all, just to mention that downloading database for bacteria only do not work at the moment "Step 1/2: Performing rsync file transfer of requested files rsync: link_stat "/all/GCF/030/866/925/GCF_030866925.1_ASM3086692v1/GCF_030866925.1_ASM3086692v1_genomic.fna.gz" (in...

16S databases or full database?

3

Hey all, I am starting to try to integrate kraken2 in my Mothur pipeline. I really love Mothur, but the taxonomic assignation is not optimal for my situation. This is...

Allow extended prior sequences (e.g. full-length 16S)

3

I am extremely interested in using priors. What is the format of this file? fasta, amplicon style (for example, V4 region only) or fasta full 16S read?