Alex Fletcher

A brief overview of the code structure is provided in [Section 6.2.3](https://github.com/Chaste/Chaste/files/11762183/Pages.from.Dan_Harvey_DPhil_thesis.pdf) of Dan Harvey's DPhil thesis. It looks like Dan's approach is to create a class `NodeBasedCellPopulationWithSemId` inheriting from...

Dan Harvey's full DPhil thesis: https://ora.ox.ac.uk/objects/uuid:95f50f05-9cf5-4c58-9115-aff7aabdfd6f/files/m25393982233b14b3892ac994f014e96e

Original SEM paper: https://iopscience.iop.org/article/10.1088/1478-3975/5/1/015002/meta

Relevant recent paper by Dokmegang et al: https://www.biorxiv.org/content/10.1101/2020.06.08.140269v4

Just chased Arnau.

Here are the questions I sent Arnau and Thalia (in italics), along with their response. _General_: _- One way to help minimise ambiguity in the unit tests would be to...

I'm pasting an email from Thalia Diniaco from PerMedCoE on 20th Dec 2023: thanks for providing the results. I have some questions regarding the newly added results. In the unit...

The long duration certainly seems to be down to resetting the simulation such a large number of times, as can be verified by replacing the test with a single run...

What is left to do on this issue?