Yamei Deng

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icon company University of Michigan icon location Ann Arbor, Michigan icon location Bioinformatics

Results 5 comments of Yamei Deng

FDR ISSUE

Can you share the whole log file with us? Just want to know how many initial identifications before applying FDR filtering.

the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter

yes please, and it would be more helpful if you can directly provide the .pep.xml files with this error.

protein FDR filter didn't reach the desired threshold error

Can you share those .pep.xml files from 1_Burg_ctrl_H2O_1 folder? That will help us locate the error.

protein FDR filter didn't reach the desired threshold error

Thanks, but could you please share the interact-*.pep.xml files instead?

protein FDR filter didn't reach the desired threshold error

Can you share the combined.prot.xml file as well? Looks like too many decoy proteins there