philosopher
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FDR ISSUE
Hi Fengchao, Hope you are well. I had an error see below, Do you suggest changing the fdr from 0.01 to 0.05 in the "fdr filter and report"section of the "validation tab" and if so is this okay.
ERRO[21:06:13] the protein FDR filter didn't reach the desired threshold, try a higher threshold using the --prot parameter Process 'PhilosopherFilter' finished, exit code: 2 Process returned non-zero exit code, stopping