Adrija Kalvisa

question: how to test two region sets for differential enrichment with buildRestrictedUniverse?

2

Hi there, Thanks for the useful package, it makes enrichment calculations a breeze. I am currently trying to find whether two region sets are differentially enriched in certain features. Could...

It would be great to use several simultaneous scaling options for the same axis, for example reverse axis and log10 scaling.

When launching esquisser() from R markdown code chunk, it is impossible to load variables from the chosen dataframe. This is not an issue if esquisser() is launched from the Rstudio...

update module use for computerome.md

1

Hi @marcmtk, would it be possible to update computerome documentation at https://github.com/nf-core/configs/blob/master/docs/computerome.md ```[tasklist] ### Tasks - [ ] fix typo: `module load tools Nextflow/20.10` --> `module load tools nextflow/20.10.0` -...

Remove confusing language for sample sheets (related to Issue #98)

3

## PR checklist - [x ] Usage Documentation in `docs/usage.md` is updated.

### Description of the bug Hi all, I have encountered a buggy behaviour in samplesheet processing: My samplesheet has specified absolute paths to different files (`/path/to/run_01/` and `/path/to/run_02/`) with same...