AMA

Does that happen with slamdunk count (v0.4.3)? I have an issue with slamdunk count, and trying to figure out the problem. It doesn't generate any output files. I ran the...

@t-neumann I don't get any errors or logs. I tried running count from scratch again. It seems the date of bamIndex file is checked with ">". I tried "touch bamIndex.bai"....

@t-neumann I figured it out. My bad! I'm building a workflow using CWL, and one of the step before running the count dunk is moving the bam and its index...

Just wanted to add. I tried running count without giving the max read length, but it doesn't generate any files or errors. I had to set it manually. It seems...