slamdunk
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Unknown behaviour read > max read length
Currently only tcperreadpos crashes if a read is found > than a manually set max read length. Add some checks if such behaviour is observed and throw warnings or even abort.
Just wanted to add. I tried running count without giving the max read length, but it doesn't generate any files or errors. I had to set it manually. It seems the estimate function is not working with me.
Yeah currently the estimation is not properly working when you feed in trimmed reads so we recommend to set it manually.