Afif Elghraoui

> We are currently still working on a debian package for HINGE The Debian package is waiting for a new tagged release, which would incorporate the wrapper program.

Thanks. I was just suggesting here that this be clarified in the documentation

You don't need permission for that because the code is under a free/open source license. I was surprised there wasn't already a package.

Ok, it ran for a while, then there was an unrelated node failure (a few of my other unrelated jobs on other nodes also failed at the same time, so...

Hi, I know this overlapped with the holiday season, but I wanted to make sure it isn't forgotten. My allocation on the cluster expired and I'll see if we can...

sorry for the delay, but I've gotten renewed access to the cluster and just run it with these three settings. Now I've gotten a new error right before the core...

Yes, it's pretty straightforward. You just make an account there, link it to your github account, set up an auto-build based on this repository, tell it where to find the...

For the record here, I had to modify the Dockerfile to be able to properly convert it to Singularity. I've made the PR https://github.com/ssadedin/ximmer/pull/8.

Hmm. I think there's something wrong then. If the coordinates are both 1-based, then the length should be abs(Start - End) + 1. In my example above, the length is...

what looks to actually be the case currently in maf2synteny's blocks_coords is that the smaller of the two numbers (Start for + strand blocks, Stop for - strand blocks) is...