Jacob Gershon

Hi, this is something that can be possible, if you are familiar with hallucination type approaches for design this is something that could be worth trying here as a potential,...

Hi sorry for the late reply, if you send me an email with your availability we can set up a time to zoom: [email protected]

Yes it should definitley be possible to do this using the contigs and inpaint_seq flag, if you are not familiar with these arguments, I'm happy to give some more detail

There is no head for predicting ipTM, I think the best thing to do is fold designs from the model in AlphaFold multimer and use the ipTM metric to score.

Hey Alex, I would try with a smaller number of amino acids (100 aa) or more steps (100 steps), the network often can struggle at larger lengths to generate cohesive...

in the utils folder there is a potentials.py file where all of the potentials are located, you can incorporate your own classifer into here. In the sample generation loop, after...

Hi, can you send along the line you are submitting to get this error?

There is no diffusion in str space happening here, only in sequence space

Maybe there's a misunderstanding here? Where do you see diffusion in structure space in the text?