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No logic for structure diffusion

Open jsrimr opened this issue 1 year ago • 4 comments

Following inference.py code, I come to doubt if there exist code for structure diffusion.

Is this intended or I'm just missing something?

Any advice would help a lot!

jsrimr avatar Sep 21 '23 02:09 jsrimr

There is no diffusion in str space happening here, only in sequence space

0merle0 avatar Sep 25 '23 18:09 0merle0

Sad to hear that. Do you have any plan to integrate structure space diffusion as described in the paper?

jsrimr avatar Sep 26 '23 12:09 jsrimr

Maybe there's a misunderstanding here? Where do you see diffusion in structure space in the text?

0merle0 avatar Sep 26 '23 16:09 0merle0

As the title of the paper is 'Joint Generation of Protein Sequence and Structure', I thought it's d be natural to diffuse both sequence and structure. Maybe I'm getting something wrong.. Should the structure be fixed?

jsrimr avatar Sep 27 '23 05:09 jsrimr