differential-expression topic

Brings bulk and pseudobulk transcriptomics to the tidyverse

stemangiola

Differential expression analysis for single-cell RNA-seq data.

theislab

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

dmcable

integrated RNA-seq Analysis Pipeline

nunofonseca

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

snakemake-workflows

Porting DESeq2 into python via rpy2

wckdouglas

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

lpantano

Explore and share your scRNAseq clustering results

BaderLab

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

Bohdan-Khomtchouk

Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis

grimmlab