transcriptomics topic

PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:

genular

OmicsSuite website for releasing new version.

OmicsSuite

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

nf-core

ASAP : Automated Single-cell Analysis Pipeline

DeplanckeLab

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

PalMuc

𝒫robabilistic modeling of RNA velocity ⬱

pinellolab

National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

sdomanskyi

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

PavlidisLab

Gene Co-expression Network analysis pipeline

Kumquatum