transcriptomics topic
fishpond
Differential expression and allelic analysis, nonparametric statistics
pinfish
Tools to annotate genomes using long read transcriptomics data
pipeline-nanopore-denovo-isoforms
Pipeline for de novo clustering of long transcriptomic reads
pipeline-pinfish-analysis
Pipeline for annotating genomes using long read transcriptomics data with pinfish
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among feature...
MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data