transcriptomics topic

List transcriptomics repositories

fishpond

24
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9
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Differential expression and allelic analysis, nonparametric statistics

pinfish

43
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13
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Tools to annotate genomes using long read transcriptomics data

pipeline-nanopore-denovo-isoforms

26
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6
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Pipeline for de novo clustering of long transcriptomic reads

pipeline-pinfish-analysis

27
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5
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Pipeline for annotating genomes using long read transcriptomics data with pinfish

MINTIE

33
Stars
7
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Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

IsoQuant

123
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11
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Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

imsig

25
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7
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Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

GSSplayground

32
Stars
8
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Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among feature...

MERlin

35
Stars
29
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MERlin is an extensible analysis pipeline applied to decoding MERFISH data