Ex Center for Algorithmic Biotechnology
Ex Center for Algorithmic Biotechnology
quast
Genome assembly evaluation tool
spades
SPAdes Genome Assembler
IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
npdtools
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
stringdecomposer
Tool for decomposition centromeric assemblies and long reads into monomers
TandemTools
Tool for assessing/improving assembly quality in extra-long tandem repeats
metaGT
Pipeline for metagenome and metatranscriptome joint assembly
rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data