synteny topic
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
mcscan
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
quota-alignment
Guided synteny alignment between duplicated genomes (within specified quota constraint)
pyGenomeViz
A genome visualization python package for comparative genomics
pyScaf
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
GSSplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among feature...
gcv
Federating genomes with love (and synteny derived from functional annotations)
coge
CoGe (Comparative Genomics) Platform
accusyn
AccuSyn: An Accurate Web-based Genome Synteny Browser