isoforms topic

List isoforms repositories

IsoSeq

182
Stars
61
Forks
Watchers

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

vcf2maf

357
Stars
212
Forks
Watchers

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Long-Read-Proteogenomics

37
Stars
15
Forks
Watchers

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

scNanoGPS

38
Stars
2
Forks
Watchers

Single cell Nanopore sequencing data for Genotype and Phenotype

Sierra

48
Stars
17
Forks
Watchers

Discover differential transcript usage from polyA-captured single cell RNA-seq data

DTUrtle

16
Stars
3
Forks
Watchers

Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at: