long-read-sequencing topic
awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
mag
Assembly and binning of metagenomes
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
centroFlye
An algorithm for centromere assembly using long error-prone reads
ultra
Long-read splice alignment with high accuracy
berokka
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
strainy
Graph-based assembly phasing
ClairS
ClairS - a deep-learning method for long-read somatic small variant calling
goldrush
Linear-time de novo Long Read Assembler