biomedical-image-processing topic
mmc
Mesh-based Monte Carlo (MMC)
WSISegmentation
Segmenting WSIs using Deep Convolutional Neural Networks
Cancer-Detection-from-Microscopic-Tissue-Images-with-Deep-Learning
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
im2im-uq
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
sofima
Scalable Optical Flow-based Image Montaging and Alignment
BiaPy
Open source Python library for building bioimage analysis pipelines
OCT-Retinal-Layer-Segmenter
UNet based model that segment retina to 8 layers in OCT images
Skin_Lesions_Classification_DCNNs
Transfer Learning with DCNNs (DenseNet, Inception V3, Inception-ResNet V2, VGG16) for skin lesions classification
zmesh
Marching Cubes & Mesh Simplification on multi-label 3D images.
visual-med-alpaca
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.