spatialdata-plot
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scverse
Static plotting for spatialdata
This speeds everything up for me locally, but for the benchmark (#296), I see an effect (aka datashader faster than matplotlib) for e.g. 10k points/shapes etc.
Hi, The legend of figures is higher than the figure, which makes it ugly. It would be nice if users can adjust colorbar's colormap, height, width, position, vmax, vmin. All...
Hi, The figures plotted by spatialdata is not as clear as that of squidpy (perhaps because the scatter point size is too small, but I didn't find where to adjust...
When `method=datashader` is used the colors that are produced are wrong. Strangely the colorbar is correct. Initially I though this was due to the choice of the `agg` function when...
The [Squidpy notebook](https://github.com/scverse/spatialdata-notebooks/blob/main/notebooks/examples/technology_visium_hd.ipynb) shows an error liked to rasterizatation. @Sonja-Stockhaus could you please have a look at it? Thanks 😊 This is part of the log: ``` 300 else: 301...
For plotting points with matplotlib, we use the `s` argument of `scatter()`. The *square root* of `s` specifies the width and height of the markers in points. In the datashader...
So far, `sum()` is the default, but we should include also `any, count, m2, mean, mode, std, sum, var`. Complete list: https://datashader.org/api.html#reductions @timtreis and I excluded some because they don't...
I have noticed that if I create a figure with `plt.figure()`, setting the `dpi` in `plt.figure()` leads to a smaller plot than if setting the `dpi` in `pl.show()`. I think,...
I am trying to plot some raster data with a different normalization (vmin, vmax) for the cmap. Both approaches I used unfortunately don't work, can you have a look at...
I wrote some benchmarks available here https://github.com/scverse/spatialdata-plot/pull/295 (they can simply run as tests) and I have noticed that the datashader performance is worse than the matplotlib based one. I think...