spatialdata-plot
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scverse
Static plotting for spatialdata
I get the following error when trying to import spatialdata_plot with the latest version of spatialdata-plot: ``` import spatialdata_plot Traceback (most recent call last): File ““, line 1, in File...
I've come across a weird "artifact" that can be triggered when plotting labels with `outline=True`: ```python sdata.pl.render_labels(outline=False).pl.show() ```  ```python sdata.pl.render_labels(outline=True).pl.show() ```  It's a little hard to see, but...
As a user, I (may) want to render just the data, without title/legend/axes. This is related to https://github.com/scverse/spatialdata-plot/issues/189. The spatialdata-plot defaults produce a classic matplotlib plot with title, labelled axes...
Seemingly the color of background labels is not respected. This is the output from the mibitof notebook:  I remember having fixed this issue before but somehow it got reintroduced...
It would be great to have a `gene_symbols` argument to render_shapes and render_points, similar to what scanpy has in all (most?) plotting functions. The goal is being able to use...
I'm running into the following issue: I have a multichannel image saved in a SpatialData object, and I've annotated the color coordinate according to the channels they correspond to, like...
I'd suggest you make all the plotting parameters keyword-only arguments, e.g.: ```diff def render_shapes( self, elements: list[str] | str | None = None, color: list[str | None] | str |...
I have just noticed that the squidpy notebook can't make the last plot; it should be a quick fix. The latest version of the notebook (gonna be merge in main...
Refactored _set_color_source_vec to be compatible with the new get_values that can grab table annotating points. Also refactored _render_points to be able to plot the new annotations.
It seems not to be possible to plot table annotations on points. This was not possible before the table refactoring because tables could not annotate points. @melonora is this expected...