Quentin Blampey

Thanks @lguerard for detailing the issue. How much RAM and how many CPU cores do you have?

Alright, thanks for the details. I'm still experimenting with the dask Client, so I'll try to improve it over time to have a stable release in sopa 2.0.0

Tagging issue #145 so that we can discuss about all the issues with the dask backend. I'm closing this issue to continue on the other one!

Yes this was what I observed when working on your previous PR. This is why I assumed a prior was always needed, but it may be wrong, let me know...

I'll close the issue because, as said above, Proseg probably can't be run without a prior. Don't hesitate to re-open if you found out I was wrong!

Thanks @lguerard, I'll try to reproduce it!

Here is what I tried: ## On my current env Same command lines with my already-existing environment: the CSV is fine. Proseg doesn't work either, but it's expected because the...

Hi @lguerard, were you able to try installing sopa in a fresh conda env as mentioned above? I'm sorry for not being able to reproduce this issue, although you gave...

Hi @lguerard, just a quick follow-up on this issue. I was still not able to reproduce it, and since there is no other user complaint, I'm wondering if this issue...

Hello @lopollar, indeed for now the existing general readers ([`sopa.io.ome_tif`](https://gustaveroussy.github.io/sopa/api/io/#sopa.io.ome_tif) and [`sopa.io.aicsimageio`](https://gustaveroussy.github.io/sopa/api/io/#sopa.io.aicsimageio)) are only reading images, but not transcript files I could add some extra parameters to read a transcript...