Peter Sobolewski
Peter Sobolewski
Hi @tlambert03 the python 3.7 tests are actually running in napari 0.4.14, but failing due to the `importlib_metadata` issue. Anyhow, I will make a separate PR to try to try...
Hmm, so now it's the same symptom as `napari-serialcellpose` with macOS tests stalling: https://github.com/guiwitz/napari-serialcellpose/pull/8 Not sure why simply adding `progress=True` would do that... Edit: The tests hang for my locally...
Grr, the hanging tests. Happens locally on my mac too -- but everything works when running in napari. ``` ❯ pytest . WARNING:root:openblas_set_num_threads not found ============================= test session starts ==============================...
For a folder of images, check out: https://github.com/guiwitz/napari-serialcellpose
I can confirm this on cellpose 2.2.3 Traceback: ``` TypeError Traceback (most recent call last) File ~/micromamba/envs/cellpose/lib/python3.10/site-packages/superqt/utils/_qthreading.py:617, in create_worker..reraise(e=TypeError("get_masks() got an unexpected keyword argument 'flows'")) 616 def reraise(e): --> 617...
I can confirm both the error and the workaround -- looks like the plugin needs to be updated for the latest cellpose release
Sorry I don't -- for a bit Talley was merging some PR... Maybe we try ping to @carsen-stringer and see what the plan is for this repo.
@tlambert03 this one seems OK to review. 🙏
Try: https://labelstorois.github.io using the labels/masks output from cellpose. If you scroll down there is an example video with cellpose.
I've been meaning to take a look at trying some progress bars... I'm willing to help and should have a bit more time starting this weekend, but probably will need...