ROI manager compatible output for ImageJ/Fiji

[Minarazagh]

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After running segmentation in napari, I need to analyze my images in Fiji environment. In the cell pose guideline book you wrote command lines that we can save outline.txt and I have done that for google Collab environment and it did work pretty well. However, I am wondering how export outline and mask from napari to the Fiji ROI manager.

Any help would be appreciate it! Thanks!

[psobolewskiPhD]

Try: https://labelstorois.github.io using the labels/masks output from cellpose. If you scroll down there is an example video with cellpose.

[carsen-stringer]

thanks @psobolewskiPhD