Ploy N. Pratanwanich

pyensembl install --release 91 --species homo_sapiens

model_kmer.csv was added to the model package and automatically installed using pip.

It should work fine. Actually we ran xpore on our data from both SQK-RNA001 and SQK-RNA002.

@pabloacera Thank you very much. Yes, it was the memory issue. I've encountered this before when I used python 3.7 :(. I've changed the python version required for this package...

Hi @DrDaedalusWHU, FYI, the files are all up-to-date. Perhaps try using `wget`. Let me know if you still have any problem.

Hi @DrDaedalusWHU, I have updated the demo.tar.gz file already. Could you please try again? Note that the download link is changed to https://zenodo.org/record/5162402/files/demo.tar.gz

Hi @Huanle, We have been currently updating the documentation. Hopefully, more information is coming soon. At the meantime, you can refer to our preprint (https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1).

Hi @Huanle and @lingolingolin, Sorry for the delay. Here is the short description of the diffmod.table. Hope this helps. You will be able to find it in https://xpore.readthedocs.io/en/latest/ soon. **Short...

Hi @lingolingolin, Based on the two criteria you gave (z-score and pval), it should be a positive detection. Another criteria you can use to filtering only a single type of...

Hi @lingolingolin, With this config, t-test will be performed at the prefiltering step, that is, xpore will not model those positions where intensity mean between conditions are not different based...