Ploy N. Pratanwanich

Hi @lionelus, Yes, it is the number of processes you want to run a job.

Hi @a-slide, What python version do you use? Can you try with Python3.8?

Can you also try with `pip install xpore` for now? It will install the latest version (0.5.6). I will have a look into the version related issue again.

Yes, --signal-index is required. Thanks, the document was updated.

Change the starting and ending of the data.json file because we don't need it! Other file formats should be considered.

**Updated**: Major changes are the following. - Only 2 steps left. - Convert trascriptomic to genomic on the fly. - Users can choose to model on genomic or transcriptomic coordinates....

**Updated**: Major changes are the following. - Limit the number of reads. **Goal**: Convert the output from nanopolish-eventalign which is in a read-wise format in transcriptomic coordinates to a position-wise...

I think so. I fixed this and updated the software to version 0.5.1 already. Thanks to the post #17. What I did was adding --species in xpore-dataprep that you can...

For this version, yes the species have to be known in the ensemble annotation. I will consider this in the next release then. The thing is Nanopolish eventalign requires reference...

Hi @lingolingolin , Another thing that you can do is to extract the transcriptome sequence from the genome sequence when the gtf is available. Then you can run nanopolish eventalign...