nf-core

Protein 3D structure prediction pipeline

nf-core

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

nf-core

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

nf-core

gatk4 RNA variant calling pipeline

nf-core

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

nf-core

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

nf-core

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the...

nf-core

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

nf-core

A pipeline to investigate horizontal gene transfer from NGS data

nf-core

UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

nf-core