nf-core

Amplicon sequencing analysis workflow using DADA2 and QIIME2

nf-core

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

nf-core

Nanopore demultiplexing, QC and alignment pipeline

nf-core

RNA-seq analysis pipeline for detection of gene-fusions

nf-core

Assembly and intrahost/low-frequency variant calling for viral samples

nf-core

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

nf-core

Config files used to define parameters specific to compute environments at different Institutions

nf-core

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

nf-core

Simple bacterial assembly and annotation pipeline

nf-core

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

nf-core