funcscan
funcscan copied to clipboard
nf-core
(Meta-)genome screening for functional and natural product gene sequences
Feature request: enable --clusterhmmer, --fullhmmer, and --tigrfam options in the antiSMASH module
### Description of feature Dear funcscan developers, I was wondering why the antiSMASH module in the funcscan pipeline doesn’t include the --clusterhmmer, --fullhmmer, or --tigrfam options. These options are quite...
### Description of the bug There is a bug in the merging step of hamronization results with the taxonomy results. ARG hits are duplicated in some cases probably because some...
### Description of feature In some cases, ampcombi_parsetables crashes when using certain DRAMP database version. Unfortunately, the versions cannot be tracked because the maintainers simply don't provide them, only the...
see https://github.com/runs-on/runs-on/releases/tag/v2.9.0 for details
### Description of feature I have submitted PR and it has been merged to the module (https://github.com/nf-core/modules/pull/8216), based on the nf-core community's suggestion (https://github.com/nf-core/proposals/issues/27), I would request to add those...
## PR checklist Close #481. The main changes include: - Like other screening tools, added a dedicated subworkflow (`subworkflows/dbcan.nf`) for the support of [run_dbcan](https://github.com/bcb-unl/run_dbcan) screening. - Added the annotation step...
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
### Description of the bug Reported by Yusuke Hioki (not on GH) When supplying files to `--annotation_bakta_hmms`, it results in `.command.sh: line 3: ${params.annotation_bakta_hmms}: bad substitution` error This is likely...
### Description of feature There have been a major version update and feature changes to the argNorm tool. It has to be updated on module-level first and then adapted on...
### Description of feature It would be nice to have a way of reading and InterProScan TSV file (for example one produced by [nf-core/proteinannotator](https://nf-co.re/proteinannotator)) as input to nf-core/funcscan.
