Sudarshan

Dear @schifferl thanks for the clarification!

Yes I think the `microbiome::divergence` function can be wrapped for more intuitive and global comparison (`compare_divergence`/`global_divergence`) to get something as shown below. I got some request for this. IMO the...

Hi! Thanks for using our tool. It is difficult to guess what caused this error if it is working fine on the test data. Could you share your phyloseq object...

Hi both, Thanks for including me in this. I largely agree with Leo on having first a workflow approach that introduces the entire miaverse framework for microbiome data science. Something...

I can add this to OMA along with the source. Do yo have a preference for location/folder?

I will work on this in the coming days, was avoiding updating the R version on my system :P Some comments: The `getDominantTaxa` parts of which are inspired from [microbiomeutilties::dominant_taxa](https://github.com/microsud/microbiomeutilities/blob/master/R/dominant_taxa.R)...

I am thinking of how best to make summaries. Only raw `counts` should be allowed because that is what is meaningful. 1. Overall based on all samples and all features...

I am working on general-purpose summarization functions. You can start by making `summarizeDominantTaxa` function, in summaries.R, after that I will add `summarizeSE` to that same file. These are basic summaries....

Yes as soon as find time. Can we keep this open?

I think this available as summary() in Mia.