Sudarshan
I had a look at the `perFeatureQCMetrics` and `perCellQCMetrics` again. These are now part of the `scuttle` package as utilities for `SingleCellExperiment` and used by `mia` . We now provide...
The taxonomic labels are challenging. The option I use is different. Often the uncultured taxa are rare and therefore by using the `agglomerateByPrevalence` you can avoid them. ``` tse
I have been thinking about this also. The HuMAnN3 output has one key and important aspect which is often underestimated. Example data:  There is function-species linkage information that can...