microbiomeutilities icon indicating copy to clipboard operation
microbiomeutilities copied to clipboard

plot_taxa_boxplot error

Open bsomervi opened this issue 3 years ago • 2 comments

when attempting to plot_taxa_boxplot I get the following error. image I don't get the error when using the test data phyloseq object. there are some data type differences between my phyloseq object and the test data object but I'm not sure what would cause the error.

my phyloseq object image

zackular phyloseq object image

bsomervi avatar Oct 27 '22 14:10 bsomervi

Hi! Thanks for using our tool. It is difficult to guess what caused this error if it is working fine on the test data. Could you share your phyloseq object (saved as rds file) via email to sudarshanshetty9[@]gmail[dot]com? You can save the phyloseq object as follows: saveRDS(physeq, "physeq.rds") I will try to check this as soon as I find some free time.

Best wishes, Sudarshan

microsud avatar Oct 27 '22 16:10 microsud

Sure no problem.

On Thu, Oct 27, 2022 at 12:23 PM Sudarshan @.***> wrote:

Hi! Thanks for using our tool. It is difficult to guess what caused this error if it is working fine on the test data. Could you share your phyloseq object (saved as rds file) via email to sudarshanshetty9[@]gmail[dot]com? You can save the phyloseq object as follows: saveRDS(physeq, "physeq.rds") I will try to check this as soon as I find some free time.

Best wishes, Sudarshan

— Reply to this email directly, view it on GitHub https://github.com/microsud/microbiomeutilities/issues/182#issuecomment-1293776488, or unsubscribe https://github.com/notifications/unsubscribe-auth/ALT74VXJL2LM5UU3SUCBIQLWFKT75ANCNFSM6AAAAAARQDNSEU . You are receiving this because you authored the thread.Message ID: @.***>

bsomervi avatar Oct 27 '22 17:10 bsomervi